Ballasted aggregation, a process using the addition of a ballasting agent to improve the settling performance of flocs, appears particularly appropriate for the treatment of humic rich waters that leads to low-density aggregates. In that context, using an aquagenic humic acid coagulated by ferric chloride in the presence of pozzolana particles as ballasting agent, we show that the origin of improved floc settling in ballasted aggregation is not simply related to an increased specific weight of flocs, but also to a significant restructuring of flocs to a more compact structure induced by the added particles. The floc restructuring is evidenced from the increased lag time before measurable floc growth in the presence of the ballasting agent, the higher fractal dimension of flocs above the micron scale range after incorporation of the particles into the aggregates, and a much smaller sediment volume after settling. A simple model of floc compaction based on the turbulent viscous effects that act on an elastic floc, is described.