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K. Mathias Wegner, Benjamin Morga, Laure Guillou, Martina Strittmatter, Cyrielle Lecadet, et al.. Prokaryotic microbiota outperform eukaryotic microbiota in differentiating between infection states of iconic diseases of two commercial oyster species. Aquaculture, 2025, 594, pp.741363. ⟨10.1016/j.aquaculture.2024.741363⟩. ⟨hal-04665295⟩

Pierre-Guillaume Brun, Stéphane Hourdez, Marion Ballenghien, Yadong Zhou, Jean Mary, et al.. A step in the deep evolution of Alvinellidae (Annelida: Polychaeta): A phylogenomic comparative approach based on transcriptomes. Molecular Phylogenetics and Evolution, 2024, 201, pp.108207. ⟨10.1016/j.ympev.2024.108207⟩. ⟨hal-04744263⟩

Juliette Jouhet, Eliana Alves, Yohann Boutté, Sylvain Darnet, Frédéric Domergue, et al.. Plant and algal lipidomes: Analysis, composition, and their societal significance. Progress in Lipid Research, 2024, 96, pp.101290. ⟨10.1016/j.plipres.2024.101290⟩. ⟨hal-04673335⟩

Sami El Hilali, Philippe Dru, Alan Le Moan, Yang Li, Martijn Huynen, et al.. Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments. 2024. ⟨hal-04736212⟩

Adrien Tran Lu Y, Stéphanie Ruault, Claire Daguin-Thiébaut, Anne-Sophie Le Port, Marion Ballenghien, et al.. Comparative population genomics unveils congruent secondary suture zone in Southwest Pacific Hydrothermal Vents. 2024. ⟨hal-04731700⟩

Lisa Mazéas, Ahlem Bouguerba-Collin, J. Mark Cock, France Denoeud, Olivier Godfroy, et al.. Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history. BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩. ⟨hal-04734202⟩

David M. Kehoe, Avijit Biswas, Bo Chen, Louison Dufour, Théophile Grébert, et al.. Light color regulation of photosynthetic antennae biogenesis in marine phytoplankton. Plant and Cell Physiology, 2024, ⟨10.1093/pcp/pcae115⟩. ⟨hal-04725332⟩

Chirine Toumi, Olivier Gauthier, Jacques Grall, Éric Thiébaut, Aurélien Boyé. Disentangling the effect of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years. Science of the Total Environment, 2024, 946, pp.173919. ⟨10.1016/j.scitotenv.2024.173919⟩. ⟨hal-04655346⟩

Michael Wallace, Irene Cuxart, Thomas Roret, Laura Guée, Aleksandra Debowski, et al.. Constrained Catalytic Itinerary of a Retaining 3,6-Anhydro-D-Galactosidase, a Key Enzyme in Red Algal Cell Wall Degradation. Angewandte Chemie International Edition, In press, Online ahead of print. ⟨10.1002/anie.202411171⟩. ⟨hal-04700900⟩

Corentin Baudet, Eva Bucciarelli, Géraldine Sarthou, Cédric Boulart, Ewan Pelleter, et al.. A hydrothermal plume on the Southwest Indian Ridge revealed by a multi-proxy approach: Impact on iron and manganese distributions (GEOTRACES GS02). Marine Chemistry, 2024, 265-266, pp.104401. ⟨10.1016/j.marchem.2024.104401⟩. ⟨hal-04636054⟩

Mark Hoebeke, Aurélien Schmitt. HYDROMED ETL. 2024, ⟨swh:1:dir:90e66cf5b570c6dc902dec4a52888a52d2b43d73;origin=https://gitlab.sb-roscoff.fr/future-obs/wp5/hydrochimie-cotier-med.git;visit=swh:1:snp:90e8a6623c1dca2a582a51dcee2776cb09a75453;anchor=swh:1:rev:4947a300101e5333e0e343ad8d3ef367e7b7f0ff⟩. ⟨hal-04700031⟩

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon, et al.. The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update. Nucleic Acids Research, 2024, 52 (W1), pp.W83-W94. ⟨10.1093/nar/gkae410⟩. ⟨hal-04645009⟩

Rodolfo Rondon, Catalina Valdés, Celine Cosseau, Elisa Bergami, César Antonio Cárdenas, et al.. Transcriptomic responses of Antarctic clam Laternula elliptica to nanoparticles, at single and combined exposures reveal ecologically relevant biomarkers. Ecotoxicology and Environmental Safety, 2024, 280, pp.116523. ⟨10.1016/j.ecoenv.2024.116523⟩. ⟨hal-04615510⟩

Konogan Bourhy, Laurent Bouri, Christophe Bruley, Olivier Collin, Frédéric De Lamotte, et al.. Orchestrating data flows throughout their whole life cycle. JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618277⟩

David Benaben, Christophe Blanchet, Matéo Boudet, Guillaume Brysbaert, Anthony Bretaudeau, et al.. Services deployed on the IFB National Network of Computing Resources (NNCR). JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques, Jun 2024, Toulouse, France. , 2024. ⟨hal-04618059⟩

Karine Massau, Byte-Sea Consortium, Erwan Corre. BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme. JOBIM 2024 - Journées ouvertes en biologie, informatique et mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024. ⟨hal-04693601⟩

Julie Lao, Raphael Tackx, Pierre Marin, Amanda Dieuaide, Thomas Mignon, et al.. The ABRomics platform — a One Health Antimicrobial resistance analysis service. Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France. ⟨hal-04618645⟩

Juliette Audemard, Sébastien Halary, Gabriel Markov, Jeanne Got, Anne Siegel, et al.. Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in Microcystis-associated microbial communities, in the context of freshwater cyanobacterial blooms. JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024. ⟨hal-04654522⟩

Clea Siguret, Thomas Chaussepied, Romane Libouban, Eva Mercier, Julien Seiler, et al.. Galaxy France: an example of a national UseGalaxy server. GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. pp.1-15, ⟨10.7490/f1000research.1119767.1⟩. ⟨hal-04644627⟩

Bérénice Batut, Gildas Le Corguillé, Yvan Le Bras, Loraine Brillet-Guéguen, Fabien Mareuil, et al.. Exploring the richness of the French Galaxy Ecosystem. GCC 2024 - Galaxy Community Conference, Jun 2024, Brno, Czech Republic. , pp.1-1, 2024, ⟨10.7490/f1000research.1119765.1⟩. ⟨hal-04644779⟩

Aline Migné, François Bordeyne, D Davoult. Long-term survey of intertidal rocky shore macrobenthic community metabolism and structure after primary succession. 2024. ⟨hal-04347756v2⟩

Aurore Labourel, François Thomas, Gurvan Michel, Gabrielle Potocki-Veronese. Unravelling the structure-function of a tandem pair of glycoside transporters in the marine flavobacterium Zobellia galactanivorans Dsij T. Second International Conference on Marine Flavobacteria, May 2024, Roscoff (29680), France. ⟨hal-04745767⟩

Corentin Baudet, Eva Bucciarelli, Géraldine Sarthou, Cédric Boulart, Ewan Pelleter, et al.. A hydrothermal plume on the Southwest Indian Ridge revealed by a multi-proxy approach: Impact on iron and manganese distributions (GEOTRACES GS02). Marine Chemistry, 2024, 265-266, ⟨10.1016/j.marchem.2024.104401⟩. ⟨hal-04723766⟩

Pierre-Guillaume Brun. Évolution de la thermophilie au sein de la lignée des annélides polychètes Alvinellidae. Evolution [q-bio.PE]. Sorbonne Université, 2024. Français. ⟨NNT : 2024SORUS130⟩. ⟨tel-04681118⟩

Lauric Reynes, Louise Fouqueau, D. Aurelle, Stéphane Mauger, Christophe Destombe, et al.. Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations. Journal of Evolutionary Biology, 2024, ⟨10.1093/jeb/voae048⟩. ⟨hal-04552019⟩

Sébastien Petton, Fabrice Pernet, Valérian Le Roy, Matthias Huber, Sophie Martin, et al.. French coastal network for carbonate system monitoring: the CocoriCO2 dataset. Earth System Science Data, 2024, 16 (4), pp.1667-1688. ⟨10.5194/essd-16-1667-2024⟩. ⟨hal-04553461⟩

Coralie Rousseau, Gautier Demoulinger, Sylvie Rousvoal, Delphine Champeval, Maurane Dolly, et al.. A review on the chemical ecology of the Fucaceae holobionts: from fundamental knowledge to applications. Comptes Rendus. Chimie, 2024, 26 (S2), pp.1-25. ⟨10.5802/crchim.271⟩. ⟨hal-04740350⟩

Mathilde Horaud, Rosana Arizmendi-Meija, Elisabet Nebot-Colomer, Paula López‐Sendino, Agostinho Antunes, et al.. Comparative population genetics of habitat-forming octocorals in two marine protected areas: eco-evolutionary and management implications. Conservation Genetics, 2024, 25, pp.319-334. ⟨10.1007/s10592-023-01573-8⟩. ⟨hal-04243162⟩

Florence Bultelle, Aimie Le Saux, Elise David, Arnaud Tanguy, Simon Devin, et al.. Cadmium Highlights Common and Specific Responses of Two Freshwater Sentinel Species, Dreissena polymorpha and Dreissena rostriformis bugensis. Proteomes, 2024, 12 (2), pp.10. ⟨10.3390/proteomes12020010⟩. ⟨hal-04589609⟩

Giuseppe C Zuccarello, Claire M M Gachon, Yacine Badis, Pedro Murúa, Andrea Garvetto, et al.. Holocarpic oomycete parasites of red algae are not Olpidiopsis, but neither are they all Pontisma or Sirolpidium (Oomycota). Algae, 2024, 39 (1), pp.43-50. ⟨10.4490/algae.2024.39.3.8⟩. ⟨hal-04523139⟩

Birgit Quack, D. Arevalo, H. W. Bange, K. Becker, W. Böhme, et al.. Pan-Atlantic connectivity of marine biogeochemical and ecological processes and the impact of anthropogenic pressures. Status Conference Research Vessels 2024, Mar 2024, Bremen (DE), Germany. pp.473-482. ⟨hal-04490989⟩

C. Kieffer, N. Primas, S. Hutter, A. Merckx, L. Reininger, et al.. Target fishing reveals PfPYK-1 and PfRab6 as potential targets of an antiplasmodial 4-anilino-2-trichloromethylquinazoline hit compound. Bioorganic and Medicinal Chemistry, 2024, 102, pp.117654. ⟨10.1016/j.bmc.2024.117654⟩. ⟨hal-04503278⟩

Louison Dufour, Laurence Garczarek, Bastian Gouriou, Julia Clairet, Morgane Ratin, et al.. Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology, 2024, 15, pp.1349322. ⟨10.3389/fmicb.2024.1349322⟩. ⟨hal-04467770⟩

Aline Hatem. Characterization of cationic conductance in Red Blood Cells; insights from pharmacological and pathophysiological studies. Cellular Biology. Sorbonne Université, 2024. English. ⟨NNT : 2024SORUS008⟩. ⟨tel-04563223⟩

Raphaël Morard, Kate Darling, Agnes Weiner, Christiane Hassenrück, Chiara Vanni, et al.. The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton. Biological Reviews, 2024, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩. ⟨hal-04552961⟩

Laura Kanzler, Benoît Perthame, Benoît Sarels. Structured Model Conserving Biomass for the Size-spectrum Evolution in Aquatic Ecosystems. Journal of Mathematical Biology, 2024, 88 (3), pp.26. ⟨10.1007/s00285-023-02043-y⟩. ⟨hal-03895919v2⟩

Rubén Barcia-Cruz, David Goudenège, Jorge Moura de Sousa, Damien Piel, Martial Marbouty, et al.. Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages. Nature Communications, 2024, 15 (1), pp.664. ⟨10.1038/s41467-024-44965-1⟩. ⟨hal-04413133⟩

Ann M Mc Cartney, Giulio Formenti, Alice Mouton, Diego de Panis, Luísa S Marins, et al.. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. 2024. ⟨hal-04406124⟩

Gaspard Minster, France Floc'H, Alexandre Valance, Nicolas Le Dantec, Amandine Nicolle, et al.. On the influence of bed roughness on saltation in inertial regime. Earth Surface Processes and Landforms, 2024, 49 (4), pp.1303-1315. ⟨10.1002/esp.5767⟩. ⟨hal-04419645⟩

Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, et al.. A synthesis of ocean total alkalinity and dissolved inorganic carbon measurements from 1993 to 2022: the SNAPO-CO2-v1 dataset. Earth System Science Data, 2024, 16 (1), pp.89-120. ⟨10.5194/essd-16-89-2024⟩. ⟨hal-04410454⟩

Sarah Itoïz, Clara Mouronvalle, Morgan Perennou, Elisa Chailler, Morgan Smits, et al.. Co-infection of two eukaryotic pathogens within clam populations in Arcachon Bay. Frontiers in Microbiology, 2024, 14, pp.1250947. ⟨10.3389/fmicb.2023.1250947⟩. ⟨hal-04383556⟩

Vincent Mouchi, Christophe Pécheyran, Fanny Claverie, Cécile Cathalot, Marjolaine Matabos, et al.. A step towards measuring connectivity in the deep sea: elemental fingerprints of mollusk larval shells discriminate hydrothermal vent sites. Biogeosciences, 2024, 21 (1), pp.145-160. ⟨10.5194/bg-21-145-2024⟩. ⟨hal-04494834⟩

Amélie Hoste, Thibaut Capblancq, Thomas Broquet, Laure Denoyelle, Charles Perrier, et al.. Projection of current and future distribution of adaptive genetic units in an alpine ungulate. Heredity, 2024, 132, pp.54-66. ⟨10.1038/s41437-023-00661-2⟩. ⟨hal-04365084⟩

Leon Berchtenbreiter, Abdullah Emir Mumcu, Antonia Stephanie Rackevei, J. Mark Cock, Hiroshi Kawai, et al.. 18S and ITS2 rRNA gene sequence-structure phylogeny of the Phaeophyceae (SAR, Stramenopiles) with special reference to Laminariales. European Journal of Protistology, 2024, 95, pp.126107. ⟨10.1016/j.ejop.2024.126107⟩. ⟨hal-04654945⟩

Sophie Martin, Virgile Calvert, Anne Chenuil. Physiological differences among cryptic species of the Mediterranean crustose coralline alga Lithophyllum stictiforme (Corallinales, Rhodophyta). European Journal of Phycology, 2024, Volume 59 (2024 - Issue 2), pp.Pages 184-195. ⟨10.1080/09670262.2023.2281484⟩. ⟨hal-04329191v2⟩

Justine Jacquin, Marko Budinich, Samuel Chaffron, Valérie Barbe, Fabien Lombard, et al.. Niche partitioning and plastisphere core microbiomes in the two most plastic polluted zones of the world ocean. Environmental Science and Pollution Research, 2024, 31 (28), pp.41118-41136. ⟨10.1007/s11356-024-33847-0⟩. ⟨hal-04625794⟩

Marine Di Stefano, David Nerini, Itziar Alvarez, Giandomenico Ardizzone, Patrick Astruch, et al.. Early-Life Dispersal Traits Of Coastal Fishes: An Extensive Database Combining Observations And Growth Models. Earth System Science Data, 2024, 16, pp.3851-3871. ⟨10.5194/essd-16-3851-2024⟩. ⟨insu-04729596⟩

Coral Diaz‐recio Lorenzo, Adrien Tran Lu Y, Otis Brunner, Pedro Martínez Arbizu, Didier Jollivet, et al.. Highly structured populations of copepods at risk to deep‐sea mining: Integration of genomic data with demogenetic and biophysical modelling. Molecular Ecology, 2024, 33 (9), pp.e17340. ⟨10.1111/mec.17340⟩. ⟨hal-04758530⟩

Erwan Corre, Jean-Marc Aury, Line Le Gall, Patrick Wincker, Hugues Roest Crollius. Plan de Gestion des Données : PEPR ATLASea : Atlas des génomes marins. Zenodo. 2024. ⟨hal-04709361⟩